Package: anndataR 0.99.0

Robrecht Cannoodt

anndataR: AnnData interoperability in R

Bring the power and flexibility of AnnData to the R ecosystem, allowing you to effortlessly manipulate and analyze your single-cell data. This package lets you work with backed h5ad and zarr files, directly access various slots (e.g. X, obs, var), or convert the data into SingleCellExperiment and Seurat objects.

Authors:Robrecht Cannoodt [aut, cre], Luke Zappia [aut], Martin Morgan [aut], Louise Deconinck [aut], Danila Bredikhin [ctb], Isaac Virshup [ctb], Brian Schilder [aut], Chananchida Sang-aram [ctb]

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anndataR.pdf |anndataR.html
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NEWS

# Install 'anndataR' in R:
install.packages('anndataR', repos = c('https://lazappi.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/scverse/anndatar/issues

On CRAN:

singlecelldataimportdatarepresentationanndatah5ad

6 exports 53 stars 3.38 score 3 dependencies 20 scripts

Last updated 1 months agofrom:dbc6897492. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKSep 14 2024
R-4.5-winOKSep 14 2024
R-4.5-linuxOKSep 14 2024
R-4.4-winOKSep 14 2024
R-4.4-macOKSep 14 2024
R-4.3-winOKSep 14 2024
R-4.3-macOKSep 14 2024

Exports:AnnDatafrom_Seuratfrom_SingleCellExperimentgenerate_datasetread_h5adwrite_h5ad

Dependencies:latticeMatrixR6

Using anndataR to read and convert

Rendered fromgetting-started.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2024-08-15
Started: 2023-09-18