Package: anndataR 0.99.0
anndataR: AnnData interoperability in R
Bring the power and flexibility of AnnData to the R ecosystem, allowing you to effortlessly manipulate and analyze your single-cell data. This package lets you work with backed h5ad and zarr files, directly access various slots (e.g. X, obs, var), or convert the data into SingleCellExperiment and Seurat objects.
Authors:
anndataR_0.99.0.tar.gz
anndataR_0.99.0.zip(r-4.5)anndataR_0.99.0.zip(r-4.4)anndataR_0.99.0.zip(r-4.3)
anndataR_0.99.0.tgz(r-4.4-any)anndataR_0.99.0.tgz(r-4.3-any)
anndataR_0.99.0.tar.gz(r-4.5-noble)anndataR_0.99.0.tar.gz(r-4.4-noble)
anndataR_0.99.0.tgz(r-4.4-emscripten)anndataR_0.99.0.tgz(r-4.3-emscripten)
anndataR.pdf |anndataR.html✨
anndataR/json (API)
NEWS
# Install 'anndataR' in R: |
install.packages('anndataR', repos = c('https://lazappi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/scverse/anndatar/issues
singlecelldataimportdatarepresentationanndatah5ad
Last updated 1 months agofrom:dbc6897492. Checks:OK: 7. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 14 2024 |
R-4.5-win | OK | Sep 14 2024 |
R-4.5-linux | OK | Sep 14 2024 |
R-4.4-win | OK | Sep 14 2024 |
R-4.4-mac | OK | Sep 14 2024 |
R-4.3-win | OK | Sep 14 2024 |
R-4.3-mac | OK | Sep 14 2024 |
Exports:AnnDatafrom_Seuratfrom_SingleCellExperimentgenerate_datasetread_h5adwrite_h5ad
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Create an in-memory AnnData object. | AnnData |
Convert a Seurat object to an AnnData object | from_Seurat |
Convert a SingleCellExperiment object to an AnnData object | from_SingleCellExperiment |
Generate a dataset | generate_dataset |
Read H5AD | read_h5ad |
Write H5AD | write_h5ad |