Add initial Zarr support for reading and writing .zarr stores
Allow manually setting chunk size for HDF5 writes
Add auto-chunking for HDF5 writes to improve performance
Optimise sparse matrix reading performance by avoiding
Matrix::sparseMatrix and constructing objects manually
Handle unnamed SingleCellExperiment assays in as_AnnData()
by automatically assigning names with a warning
Improve warnings when items fail to convert between objects and add new warnings and checks
Updates to vignettes
Fix broken links
Update author details
Add a benchmarking system to monitor function performance
Improvements to roundtrip tests
Improvements to HDF5 tests
Improvements to GitHub Actions CI
anndataR brings the AnnData object to R. It enables native reading
and writing of H5AD files and conversion to/from
SingleCellExperiment and Seurat objects.
An R6 class to work with AnnData objects in R (either
in-memory or on-disk)
Natively read/write H5AD files without needing a Python environment
Convert to/from SingleCellExperiment objects
Convert to/from Seurat objects