This package is considered a duplicate. The official version of this package is found at:https://bioc.r-universe.dev/zellkonverter

Package: zellkonverter 1.23.0

zellkonverter: Conversion Between scRNA-seq Objects

Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes functions to read and write H5AD files used for saving AnnData objects to disk.

Authors:Luke Zappia [aut, cre], Aaron Lun [aut], Jack Kamm [ctb], Robrecht Cannoodt [ctb], Gabriel Hoffman [ctb], Marek Cmero [ctb]

zellkonverter_1.23.0.tar.gz
zellkonverter_1.23.0.zip(r-4.7)zellkonverter_1.23.0.zip(r-4.6)zellkonverter_1.23.0.zip(r-4.5)
zellkonverter_1.23.0.tgz(r-4.6-any)zellkonverter_1.23.0.tgz(r-4.5-any)
zellkonverter_1.23.0.tar.gz(r-4.6-any)
zellkonverter_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
zellkonverter/json (API)

# Install 'zellkonverter' in R:

install.packages('zellkonverter', repos = c('https://lazappi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/theislab/zellkonverter/issues

On BioConductor:zellkonverter-1.23.0(bioc 3.24)zellkonverter-1.22.0(bioc 3.23)

singlecell dataimport datarepresentation bioconductor conversion scrna-seq

11.39 score 210 stars 6 packages 1.3k scripts 8 exports 32 dependencies

Last updated from:3cbe1b2dde. Checks:2 FAIL, 2 OK, 2 NOTE, 3 ERROR. Indexed: no.

Target	Result	Time
linux-devel-x86_64	FAIL	3884
source / vignettes	OK	1275
linux-release-x86_64	FAIL	3809
macos-release-arm64	NOTE	2930
macos-oldrel-arm64	NOTE	3153
windows-devel	ERROR	1052
windows-release	ERROR	1003
windows-oldrel	ERROR	1040
wasm-release	OK	206

Exports:.AnnDataVersions AnnData2SCE AnnDataDependencies readH5AD SCE2AnnData setZellkonverterVerbose writeH5AD zellkonverterAnnDataEnv

Dependencies:abind basilisk Biobase BiocGenerics cli DelayedArray dir.expiry filelock generics GenomicRanges here IRanges jsonlite lattice Matrix MatrixGenerics matrixStats png rappdirs Rcpp RcppTOML reticulate rlang rprojroot S4Arrays S4Vectors Seqinfo SingleCellExperiment SparseArray SummarizedExperiment withr XVector

Converting single-cell data structures between Bioconductor and Python

Overview | Reading and writing H5AD files | Converting between SingleCellExperiment and AnnData objects | Progress messages | Session information

Rendered fromzellkonverter.Rmdusingknitr::rmarkdown

Last update: 2024-10-18
Started: 2020-06-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
zellkonverter: Conversion Between scRNA-seq Objects	zellkonverter-package zellkonverter
Convert between AnnData and SingleCellExperiment	AnnData-Conversion AnnData2SCE SCE2AnnData
AnnData environment	.AnnDataVersions AnnData-Environment AnnDataDependencies zellkonverterAnnDataEnv
Expect SCE	expectSCE
Convert between Python and R objects	py_to_r.numpy.ndarray r-py-conversion
Read H5AD	readH5AD
Set zellkonverter verbose	setZellkonverterVerbose
Validate H5AD SCE	validateH5ADSCE
Write H5AD	writeH5AD