This package is considered a duplicate. The official version of this package is found at:https://bioc.r-universe.dev/zellkonverter

Package: zellkonverter 1.23.0

zellkonverter: Conversion Between scRNA-seq Objects

Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes functions to read and write H5AD files used for saving AnnData objects to disk.

Authors:Luke Zappia [aut, cre], Aaron Lun [aut], Jack Kamm [ctb], Robrecht Cannoodt [ctb], Gabriel Hoffman [ctb], Marek Cmero [ctb]

zellkonverter_1.23.0.tar.gz
zellkonverter_1.23.0.zip(r-4.7)zellkonverter_1.23.0.zip(r-4.6)zellkonverter_1.23.0.zip(r-4.5)
zellkonverter_1.23.0.tgz(r-4.6-any)zellkonverter_1.23.0.tgz(r-4.5-any)
zellkonverter_1.23.0.tar.gz(r-4.6-any)
zellkonverter_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
zellkonverter/json (API)
NEWS

# Install 'zellkonverter' in R:

install.packages('zellkonverter', repos = c('https://lazappi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/theislab/zellkonverter/issues

On BioConductor:zellkonverter-1.23.0(bioc 3.24)zellkonverter-1.22.0(bioc 3.23)

singlecell dataimport datarepresentation bioconductor conversion scrna-seq

11.39 score 210 stars 6 packages 1.3k scripts 8 exports 32 dependencies

Last updated from:3cbe1b2dde. Checks:2 FAIL, 2 OK, 2 NOTE, 3 ERROR. Indexed: no.

Target	Result	Time
linux-devel-x86_64	FAIL	3807
source / vignettes	OK	1275
linux-release-x86_64	FAIL	3810
macos-release-arm64	NOTE	2930
macos-oldrel-arm64	NOTE	3153
windows-devel	ERROR	962
windows-release	ERROR	906
windows-oldrel	ERROR	969
wasm-release	OK	206

Exports:.AnnDataVersions AnnData2SCE AnnDataDependencies readH5AD SCE2AnnData setZellkonverterVerbose writeH5AD zellkonverterAnnDataEnv

Dependencies:abind basilisk Biobase BiocGenerics cli DelayedArray dir.expiry filelock generics GenomicRanges here IRanges jsonlite lattice Matrix MatrixGenerics matrixStats png rappdirs Rcpp RcppTOML reticulate rlang rprojroot S4Arrays S4Vectors Seqinfo SingleCellExperiment SparseArray SummarizedExperiment withr XVector

Converting single-cell data structures between Bioconductor and Python

Luke Zappia, Aaron Lun

Rendered fromzellkonverter.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2024-10-18
Started: 2020-06-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
zellkonverter: Conversion Between scRNA-seq Objects	zellkonverter-package zellkonverter
Convert between AnnData and SingleCellExperiment	AnnData-Conversion AnnData2SCE SCE2AnnData
AnnData environment	.AnnDataVersions AnnData-Environment AnnDataDependencies zellkonverterAnnDataEnv
Expect SCE	expectSCE
Convert between Python and R objects	py_to_r.numpy.ndarray r-py-conversion
Read H5AD	readH5AD
Set zellkonverter verbose	setZellkonverterVerbose
Validate H5AD SCE	validateH5ADSCE
Write H5AD	writeH5AD