Package: zellkonverter
Title: Conversion Between scRNA-seq Objects
Version: 1.23.0
Date: 2026-04-29
Authors@R: c(
    person("Luke", "Zappia", , "luke@lazappi.id.au", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-7744-8565", github = "lazappi")),
    person("Aaron", "Lun", , "infinite.monkeys.with.keyboards@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0002-3564-4813", github = "LTLA")),
    person("Jack", "Kamm", , "jackkamm@gmail.com", role = "ctb",
           comment = c(ORCID = "0000-0003-2412-756X", github = "jackkamm")),
    person("Robrecht", "Cannoodt", , "rcannood@gmail.com", role = "ctb",
           comment = c(ORCID = "0000-0003-3641-729X", github = "rcannood")),
    person("Gabriel", "Hoffman", , "gabriel.hoffman@mssm.edu", role = "ctb",
           comment = c(ORCID = "0000-0002-0957-0224", github = "GabrielHoffman")),
    person("Marek", "Cmero", , "cmero.ma@wehi.edu.au", role = "ctb",
           comment = c(ORCID = "0000-0001-7783-5530", github = "mcmero"))
  )
Description: Provides methods to convert between Python AnnData objects
        and SingleCellExperiment objects. These are primarily intended
        for use by downstream Bioconductor packages that wrap Python
        methods for single-cell data analysis. It also includes
        functions to read and write H5AD files used for saving AnnData
        objects to disk.
License: MIT + file LICENSE
URL: https://github.com/theislab/zellkonverter
BugReports: https://github.com/theislab/zellkonverter/issues
Imports: basilisk, cli, DelayedArray, Matrix, methods, reticulate,
        S4Vectors, SingleCellExperiment (>= 1.11.6), SparseArray,
        SummarizedExperiment, utils
Suggests: anndata, BiocFileCache, BiocStyle, covr, HDF5Array, knitr,
        pkgload, rhdf5 (>= 2.45.1), rmarkdown, scRNAseq,
        SpatialExperiment, spelling, testthat, withr
VignetteBuilder: knitr
biocViews: SingleCell, DataImport, DataRepresentation
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
StagedInstall: no
Collate: 'AnnData2SCE.R' 'SCE2AnnData.R' 'ui.R' 'basilisk.R' 'read.R'
        'reticulate.R' 'utils.R' 'validation.R' 'write.R'
        'zellkonverter-package.R'
Config/pak/sysreqs: libpng-dev python3 zlib1g-dev
Repository: https://lazappi.r-universe.dev
Date/Publication: 2026-05-05 16:27:39 UTC
RemoteUrl: https://github.com/theislab/zellkonverter
RemoteRef: HEAD
RemoteSha: 3cbe1b2dded4968de83339ea15f93a6e9516e2ac
NeedsCompilation: no
Packaged: 2026-06-04 06:51:54 UTC; root
Author: Luke Zappia [aut, cre] (ORCID: <https://orcid.org/0000-0001-7744-8565>,
    github: lazappi),
  Aaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>,
    github: LTLA),
  Jack Kamm [ctb] (ORCID: <https://orcid.org/0000-0003-2412-756X>,
    github: jackkamm),
  Robrecht Cannoodt [ctb] (ORCID:
    <https://orcid.org/0000-0003-3641-729X>, github: rcannood),
  Gabriel Hoffman [ctb] (ORCID: <https://orcid.org/0000-0002-0957-0224>,
    github: GabrielHoffman),
  Marek Cmero [ctb] (ORCID: <https://orcid.org/0000-0001-7783-5530>,
    github: mcmero)
Maintainer: Luke Zappia <luke@lazappi.id.au>