{
  "_id": "6ad5c84843d630dc48a401fe",
  "Package": "zellkonverter",
  "Title": "Conversion Between scRNA-seq Objects",
  "Version": "1.23.0",
  "Date": "2026-04-29",
  "Authors@R": "c(\nperson(\"Luke\", \"Zappia\", , \"luke@lazappi.id.au\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7744-8565\", github = \"lazappi\")),\nperson(\"Aaron\", \"Lun\", , \"infinite.monkeys.with.keyboards@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-3564-4813\", github = \"LTLA\")),\nperson(\"Jack\", \"Kamm\", , \"jackkamm@gmail.com\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-2412-756X\", github = \"jackkamm\")),\nperson(\"Robrecht\", \"Cannoodt\", , \"rcannood@gmail.com\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-3641-729X\", github = \"rcannood\")),\nperson(\"Gabriel\", \"Hoffman\", , \"gabriel.hoffman@mssm.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-0957-0224\", github = \"GabrielHoffman\")),\nperson(\"Marek\", \"Cmero\", , \"cmero.ma@wehi.edu.au\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-7783-5530\", github = \"mcmero\"))\n)",
  "Description": "Provides methods to convert between Python AnnData objects\nand SingleCellExperiment objects. These are primarily intended\nfor use by downstream Bioconductor packages that wrap Python\nmethods for single-cell data analysis. It also includes\nfunctions to read and write H5AD files used for saving AnnData\nobjects to disk.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/theislab/zellkonverter",
  "BugReports": "https://github.com/theislab/zellkonverter/issues",
  "VignetteBuilder": "knitr",
  "biocViews": "SingleCell, DataImport, DataRepresentation",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "StagedInstall": "no",
  "Collate": "'AnnData2SCE.R' 'SCE2AnnData.R' 'ui.R' 'basilisk.R' 'read.R'\n'reticulate.R' 'utils.R' 'validation.R' 'write.R'\n'zellkonverter-package.R'",
  "Config/pak/sysreqs": "libpng-dev python3 zlib1g-dev",
  "Repository": "https://lazappi.r-universe.dev",
  "Date/Publication": "2026-05-05 16:27:39 UTC",
  "RemoteUrl": "https://github.com/theislab/zellkonverter",
  "RemoteRef": "HEAD",
  "RemoteSha": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-17 10:45:06 UTC",
    "User": "root"
  },
  "Author": "Luke Zappia [aut, cre] (ORCID: <https://orcid.org/0000-0001-7744-8565>,\ngithub: lazappi),\nAaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>,\ngithub: LTLA),\nJack Kamm [ctb] (ORCID: <https://orcid.org/0000-0003-2412-756X>,\ngithub: jackkamm),\nRobrecht Cannoodt [ctb] (ORCID:\n<https://orcid.org/0000-0003-3641-729X>, github: rcannood),\nGabriel Hoffman [ctb] (ORCID: <https://orcid.org/0000-0002-0957-0224>,\ngithub: GabrielHoffman),\nMarek Cmero [ctb] (ORCID: <https://orcid.org/0000-0001-7783-5530>,\ngithub: mcmero)",
  "Maintainer": "Luke Zappia <luke@lazappi.id.au>",
  "_user": "lazappi",
  "_type": "src",
  "_file": "zellkonverter_1.23.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/24c7b50b7c4805f7c95190acf90489731482cf46f8a173b40c02d26f1e3ee19d",
  "_filesize": 1953423,
  "_sha256": "24c7b50b7c4805f7c95190acf90489731482cf46f8a173b40c02d26f1e3ee19d",
  "_expires": "2027-01-25T11:49:29.000Z",
  "_created": "2026-10-17T10:45:06.000Z",
  "_published": "2026-10-19T07:35:36.536Z",
  "_buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117921856177,
      "time": 2821,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12099298811"
    },
    {
      "job": 117921854272,
      "time": 3899,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 117921855440,
      "time": 3211,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12100270166"
    },
    {
      "job": 117921856201,
      "time": 3453,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12099542781"
    },
    {
      "job": 117921855790,
      "time": 978,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12098078025"
    },
    {
      "job": 117921856061,
      "time": 137,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12097878712"
    },
    {
      "job": 117921854405,
      "time": 704,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "12167831395"
    },
    {
      "job": 117921854567,
      "time": 935,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "12167738393"
    },
    {
      "job": 117921854805,
      "time": 1163,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "12167962737"
    }
  ],
  "_upstream": "https://github.com/theislab/zellkonverter",
  "_commit": {
    "id": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
    "author": "Luke Zappia <lazappi@users.noreply.github.com>",
    "committer": "Luke Zappia <lazappi@users.noreply.github.com>",
    "message": "Bioconductor 3.24 devel\n",
    "time": 1777998459
  },
  "_maintainer": {
    "name": "Luke Zappia",
    "email": "luke@lazappi.id.au",
    "login": "lazappi",
    "bluesky": "@lazappi.bsky.social",
    "linkedin": "in/lazappi",
    "orcid": "0000-0001-7744-8565",
    "description": "Bioinformatician, data scientist, developer",
    "uuid": 6869320
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "basilisk",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "DelayedArray",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "reticulate",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "SingleCellExperiment",
      "version": ">= 1.11.6",
      "role": "Imports"
    },
    {
      "package": "SparseArray",
      "role": "Imports"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "anndata",
      "role": "Suggests"
    },
    {
      "package": "BiocFileCache",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "HDF5Array",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "pkgload",
      "role": "Suggests"
    },
    {
      "package": "rhdf5",
      "version": ">= 2.45.1",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "scRNAseq",
      "role": "Suggests"
    },
    {
      "package": "SpatialExperiment",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "theislab",
  "_selfowned": true,
  "_usedby": 10,
  "_updates": [
    {
      "week": "2025-43",
      "n": 6
    },
    {
      "week": "2025-44",
      "n": 5
    },
    {
      "week": "2025-46",
      "n": 1
    },
    {
      "week": "2025-48",
      "n": 1
    },
    {
      "week": "2025-52",
      "n": 3
    },
    {
      "week": "2026-16",
      "n": 1
    },
    {
      "week": "2026-19",
      "n": 4
    }
  ],
  "_tags": [
    {
      "name": "v1.19.3",
      "date": "2025-10-22"
    },
    {
      "name": "v1.20.0",
      "date": "2025-11-01"
    },
    {
      "name": "v1.21.0",
      "date": "2025-11-01"
    },
    {
      "name": "v1.20.1",
      "date": "2025-12-28"
    },
    {
      "name": "v1.21.1",
      "date": "2025-12-28"
    },
    {
      "name": "v1.21.2",
      "date": "2026-04-16"
    },
    {
      "name": "v1.22.0",
      "date": "2026-05-05"
    },
    {
      "name": "v1.23.0",
      "date": "2026-05-05"
    }
  ],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.23.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.22.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "singlecell",
    "dataimport",
    "datarepresentation",
    "bioconductor",
    "conversion",
    "scrna-seq"
  ],
  "_stars": 209,
  "_contributors": [
    {
      "user": "lazappi",
      "count": 447,
      "uuid": 6869320
    },
    {
      "user": "ltla",
      "count": 46,
      "uuid": 8166669
    },
    {
      "user": "rcannood",
      "count": 25,
      "uuid": 553642
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    },
    {
      "user": "mcmero",
      "count": 9,
      "uuid": 7799828
    },
    {
      "user": "nturaga",
      "count": 8,
      "uuid": 2746443
    },
    {
      "user": "gabrielhoffman",
      "count": 2,
      "uuid": 13241293
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    },
    {
      "user": "jackkamm",
      "count": 2,
      "uuid": 9089216
    },
    {
      "user": "kevinrue",
      "count": 2,
      "uuid": 5769108
    },
    {
      "user": "mtmorgan",
      "count": 1,
      "uuid": 118552
    }
  ],
  "_userbio": {
    "uuid": 6869320,
    "type": "user",
    "name": "Luke Zappia",
    "followers": 202,
    "description": "Bioinformatician, data scientist, developer"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/zellkonverter"
  },
  "_devurl": "https://github.com/theislab/zellkonverter",
  "_searchresults": 1996,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/zellkonverter.html",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/theislab/zellkonverter",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    ".AnnDataVersions",
    "AnnData2SCE",
    "AnnDataDependencies",
    "readH5AD",
    "SCE2AnnData",
    "setZellkonverterVerbose",
    "writeH5AD",
    "zellkonverterAnnDataEnv"
  ],
  "_help": [
    {
      "page": "zellkonverter-package",
      "title": "zellkonverter: Conversion Between scRNA-seq Objects",
      "topics": [
        "zellkonverter-package",
        "zellkonverter"
      ]
    },
    {
      "page": "AnnData-Conversion",
      "title": "Convert between AnnData and SingleCellExperiment",
      "topics": [
        "AnnData-Conversion",
        "AnnData2SCE",
        "SCE2AnnData"
      ]
    },
    {
      "page": "AnnData-Environment",
      "title": "AnnData environment",
      "topics": [
        ".AnnDataVersions",
        "AnnData-Environment",
        "AnnDataDependencies",
        "zellkonverterAnnDataEnv"
      ]
    },
    {
      "page": "expectSCE",
      "title": "Expect SCE",
      "topics": [
        "expectSCE"
      ]
    },
    {
      "page": "r-py-conversion",
      "title": "Convert between Python and R objects",
      "topics": [
        "py_to_r.numpy.ndarray",
        "r-py-conversion"
      ]
    },
    {
      "page": "readH5AD",
      "title": "Read H5AD",
      "topics": [
        "readH5AD"
      ]
    },
    {
      "page": "setZellkonverterVerbose",
      "title": "Set zellkonverter verbose",
      "topics": [
        "setZellkonverterVerbose"
      ]
    },
    {
      "page": "validateH5ADSCE",
      "title": "Validate H5AD SCE",
      "topics": [
        "validateH5ADSCE"
      ]
    },
    {
      "page": "writeH5AD",
      "title": "Write H5AD",
      "topics": [
        "writeH5AD"
      ]
    }
  ],
  "_readme": "https://github.com/theislab/zellkonverter/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "basilisk",
    "Biobase",
    "BiocGenerics",
    "cli",
    "DelayedArray",
    "dir.expiry",
    "filelock",
    "generics",
    "GenomicRanges",
    "here",
    "IRanges",
    "jsonlite",
    "lattice",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "png",
    "rappdirs",
    "Rcpp",
    "RcppTOML",
    "reticulate",
    "rlang",
    "rprojroot",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "SingleCellExperiment",
    "SparseArray",
    "SummarizedExperiment",
    "withr",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "zellkonverter.Rmd",
      "filename": "zellkonverter.html",
      "title": "Converting single-cell data structures between Bioconductor and Python",
      "author": "Luke Zappia, Aaron Lun",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Reading and writing H5AD files",
        "Converting between SingleCellExperiment and AnnData objects",
        "Progress messages",
        "Session information"
      ],
      "created": "2020-06-15 07:44:44",
      "modified": "2024-10-18 13:57:02",
      "commits": 7
    }
  ],
  "_score": 11.641496122132343,
  "_indexed": false,
  "_nocasepkg": "zellkonverter",
  "_universes": [
    "lazappi"
  ],
  "_indexurl": "https://bioc.r-universe.dev/zellkonverter",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.23.0",
      "date": "2026-10-17T10:48:10.000Z",
      "distro": "resolute",
      "commit": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
      "fileid": "https://r2.ropensci.org/24672b0ba9f81c10ce87f0ce0f1036ac98e8bca6804d70214a034876996cab3b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.23.0",
      "date": "2026-10-17T10:45:09.000Z",
      "distro": "resolute",
      "commit": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
      "fileid": "https://r2.ropensci.org/b1d0ec3ff909d27575a20cd018cb57642f957298b7d33b49c9a09caeb753e148",
      "status": "success",
      "buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.23.0",
      "date": "2026-10-17T10:49:10.000Z",
      "commit": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
      "fileid": "https://r2.ropensci.org/363302750cc779b82ab07334cb8331f15e114f7fb273667679399b0e1e021e15",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.23.0",
      "date": "2026-10-17T10:49:14.000Z",
      "commit": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
      "fileid": "https://r2.ropensci.org/9567661a66385e92923541febfee7c9c500ebc714ea0d032e835db4bcf23f065",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.23.0",
      "date": "2026-10-17T10:47:57.000Z",
      "commit": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
      "fileid": "https://r2.ropensci.org/1dbbd2a0a70701aacf509b3163aa51cd575f9063e333923bc7415a4191a4ec26",
      "status": "success",
      "buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-10-19T06:36:13.000Z",
      "commit": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
      "fileid": "https://r2.ropensci.org/b89d0785b7d24d89f9eb6f64e89005cddb85ec6e99a441a5c28fb58037dbd165",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-10-19T06:38:21.000Z",
      "commit": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
      "fileid": "https://r2.ropensci.org/af0675bace980ff5102edf04f301236c737b13ae0ab8a53dc79ff98eca79040e",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-10-19T06:42:23.000Z",
      "commit": "3cbe1b2dded4968de83339ea15f93a6e9516e2ac",
      "fileid": "https://r2.ropensci.org/8dadd8e424c1b41790d2db584c0df3a7a10d6f36666d8cea370f0b5029cf9ecb",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/lazappi/actions/runs/39025067519"
    }
  ]
}