Package: clustree 0.5.1
clustree: Visualise Clusterings at Different Resolutions
Deciding what resolution to use can be a difficult question when approaching a clustering analysis. One way to approach this problem is to look at how samples move as the number of clusters increases. This package allows you to produce clustering trees, a visualisation for interrogating clusterings as resolution increases.
Authors:
clustree_0.5.1.tar.gz
clustree_0.5.1.zip(r-4.5)clustree_0.5.1.zip(r-4.4)clustree_0.5.1.zip(r-4.3)
clustree_0.5.1.tgz(r-4.4-any)clustree_0.5.1.tgz(r-4.3-any)
clustree_0.5.1.tar.gz(r-4.5-noble)clustree_0.5.1.tar.gz(r-4.4-noble)
clustree_0.5.1.tgz(r-4.4-emscripten)clustree_0.5.1.tgz(r-4.3-emscripten)
clustree.pdf |clustree.html✨
clustree/json (API)
NEWS
# Install 'clustree' in R: |
install.packages('clustree', repos = c('https://lazappi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lazappi/clustree/issues
- nba_clusts - Clustered NBA positions dataset
- sc_example - Simulated scRNA-seq dataset
clusteringclustering-treesvisualisationvisualization
Last updated 1 years agofrom:24900bdf45. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 02 2024 |
R-4.5-win | OK | Nov 02 2024 |
R-4.5-linux | OK | Nov 02 2024 |
R-4.4-win | OK | Nov 02 2024 |
R-4.4-mac | OK | Nov 02 2024 |
R-4.3-win | OK | Nov 02 2024 |
R-4.3-mac | OK | Nov 02 2024 |
Exports:clustreeclustree_overlay
Dependencies:backportscachemcheckmateclicolorspacecpp11dplyrfansifarverfastmapgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnlmepillarpkgconfigpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrlangscalesstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Clustree | clustree-package |
Plot a clustering tree | clustree clustree.data.frame clustree.matrix clustree.Seurat clustree.seurat clustree.SingleCellExperiment |
Overlay a clustering tree | clustree_overlay clustree_overlay.data.frame clustree_overlay.matrix clustree_overlay.Seurat clustree_overlay.seurat clustree_overlay.SingleCellExperiment |
Clustered NBA positions dataset | nba_clusts |
Simulated scRNA-seq dataset | sc_example |