{
  "_id": "6a1ed456b401979e7340e159",
  "Type": "Package",
  "Package": "splatter",
  "Title": "Simple Simulation of Single-cell RNA Sequencing Data",
  "Version": "1.37.1",
  "Date": "2026-05-20",
  "Authors@R": "c(\nperson(\"Luke\", \"Zappia\", , \"luke@lazappi.id.au\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7744-8565\", GitHub = \"lazappi\")),\nperson(\"Belinda\", \"Phipson\", , \"belinda.phipson@petermac.org\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-1711-7454\", GitHub = \"bphipson\")),\nperson(\"Christina\", \"Azodi\", , \"cazodi@svi.edu.au\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-6097-606X\", GitHub = \"azodichr\")),\nperson(\"Alicia\", \"Oshlack\", , \"alicia.oshlack@petermac.org\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-9788-5690\"))\n)",
  "Description": "Splatter is a package for the simulation of single-cell\nRNA sequencing count data. It provides a simple interface for\ncreating complex simulations that are reproducible and\nwell-documented. Parameters can be estimated from real data and\nfunctions are provided for comparing real and simulated\ndatasets.",
  "License": "GPL-3 + file LICENSE",
  "URL": "https://bioconductor.org/packages/splatter/,\nhttps://github.com/Oshlack/splatter,\nhttp://oshlacklab.com/splatter/",
  "BugReports": "https://github.com/Oshlack/splatter/issues",
  "VignetteBuilder": "knitr",
  "biocViews": "SingleCell, RNASeq, Transcriptomics, GeneExpression,\nSequencing, Software, ImmunoOncology",
  "Encoding": "UTF-8",
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  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://lazappi.r-universe.dev",
  "Date/Publication": "2026-05-20 16:51:07 UTC",
  "RemoteUrl": "https://github.com/Oshlack/splatter",
  "RemoteRef": "HEAD",
  "RemoteSha": "eeb1dfcbfcb230928588f046f99082618043fe6b",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-20 19:37:18 UTC",
    "User": "root"
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  "Author": "Luke Zappia [aut, cre] (ORCID: <https://orcid.org/0000-0001-7744-8565>,\nGitHub: lazappi),\nBelinda Phipson [aut] (ORCID: <https://orcid.org/0000-0002-1711-7454>,\nGitHub: bphipson),\nChristina Azodi [ctb] (ORCID: <https://orcid.org/0000-0002-6097-606X>,\nGitHub: azodichr),\nAlicia Oshlack [aut] (ORCID: <https://orcid.org/0000-0001-9788-5690>)",
  "Maintainer": "Luke Zappia <luke@lazappi.id.au>",
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  "_user": "lazappi",
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  "_created": "2026-05-20T19:37:18.000Z",
  "_published": "2026-06-02T13:02:14.398Z",
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  "_exports": [
    "addGeneLengths",
    "BASiCSEstimate",
    "BASiCSSimulate",
    "compareSCEs",
    "diffSCEs",
    "getParam",
    "getParams",
    "kersplatEstimate",
    "kersplatSample",
    "kersplatSetup",
    "kersplatSimulate",
    "listSims",
    "lun2Estimate",
    "lun2Simulate",
    "lunEstimate",
    "lunSimulate",
    "makeCompPanel",
    "makeDiffPanel",
    "makeOverallPanel",
    "minimiseSCE",
    "mockBulkeQTL",
    "mockBulkMatrix",
    "mockEmpiricalSet",
    "mockGFF",
    "mockVCF",
    "newBASiCSParams",
    "newKersplatParams",
    "newLun2Params",
    "newLunParams",
    "newPhenoParams",
    "newSCDDParams",
    "newSimpleParams",
    "newSparseDCParams",
    "newSplatParams",
    "newSplatPopParams",
    "newZINBParams",
    "phenoEstimate",
    "phenoSimulate",
    "scDDEstimate",
    "scDDSimulate",
    "setParam",
    "setParams",
    "simpleEstimate",
    "simpleSimulate",
    "sparseDCEstimate",
    "sparseDCSimulate",
    "splatEstimate",
    "splatPopEstimate",
    "splatPopParseEmpirical",
    "splatPopQuantNorm",
    "splatPopSimulate",
    "splatPopSimulateMeans",
    "splatPopSimulateSC",
    "splatSimulate",
    "splatSimulateGroups",
    "splatSimulatePaths",
    "splatSimulateSingle",
    "summariseDiff",
    "zinbEstimate",
    "zinbSimulate"
  ],
  "_help": [
    {
      "page": "addGeneLengths",
      "title": "Add gene lengths",
      "topics": [
        "addGeneLengths"
      ]
    },
    {
      "page": "BASiCSEstimate",
      "title": "Estimate BASiCS simulation parameters",
      "topics": [
        "BASiCSEstimate",
        "BASiCSEstimate.matrix",
        "BASiCSEstimate.SingleCellExperiment"
      ]
    },
    {
      "page": "BASiCSParams",
      "title": "The BASiCSParams class",
      "topics": [
        "BASiCSParams",
        "BASiCSParams-class"
      ]
    },
    {
      "page": "BASiCSSimulate",
      "title": "BASiCS simulation",
      "topics": [
        "BASiCSSimulate"
      ]
    },
    {
      "page": "compareSCEs",
      "title": "Compare SingleCellExperiment objects",
      "topics": [
        "compareSCEs"
      ]
    },
    {
      "page": "diffSCEs",
      "title": "Diff SingleCellExperiment objects",
      "topics": [
        "diffSCEs"
      ]
    },
    {
      "page": "getParam",
      "title": "Get a parameter",
      "topics": [
        "getParam",
        "getParam,Params-method"
      ]
    },
    {
      "page": "getParams",
      "title": "Get parameters",
      "topics": [
        "getParams"
      ]
    },
    {
      "page": "kersplatEstimate",
      "title": "Estimate Kersplat simulation parameters",
      "topics": [
        "kersplatEstimate",
        "kersplatEstimate.matrix",
        "kersplatEstimate.SingleCellExperiment"
      ]
    },
    {
      "page": "KersplatParams",
      "title": "The KersplatParams class",
      "topics": [
        "KersplatParams",
        "KersplatParams-class"
      ]
    },
    {
      "page": "kersplatSample",
      "title": "Kersplat sample",
      "topics": [
        "kersplatSample"
      ]
    },
    {
      "page": "kersplatSetup",
      "title": "Kersplat setup",
      "topics": [
        "kersplatSetup"
      ]
    },
    {
      "page": "kersplatSimulate",
      "title": "Kersplat simulation",
      "topics": [
        "kersplatSimulate"
      ]
    },
    {
      "page": "listSims",
      "title": "List simulations",
      "topics": [
        "listSims"
      ]
    },
    {
      "page": "lun2Estimate",
      "title": "Estimate Lun2 simulation parameters",
      "topics": [
        "lun2Estimate",
        "lun2Estimate.matrix",
        "lun2Estimate.SingleCellExperiment"
      ]
    },
    {
      "page": "Lun2Params",
      "title": "The Lun2Params class",
      "topics": [
        "Lun2Params",
        "Lun2Params-class"
      ]
    },
    {
      "page": "lun2Simulate",
      "title": "Lun2 simulation",
      "topics": [
        "lun2Simulate"
      ]
    },
    {
      "page": "lunEstimate",
      "title": "Estimate Lun simulation parameters",
      "topics": [
        "lunEstimate",
        "lunEstimate.matrix",
        "lunEstimate.SingleCellExperiment"
      ]
    },
    {
      "page": "LunParams",
      "title": "The LunParams class",
      "topics": [
        "LunParams",
        "LunParams-class"
      ]
    },
    {
      "page": "lunSimulate",
      "title": "Lun simulation",
      "topics": [
        "lunSimulate"
      ]
    },
    {
      "page": "makeCompPanel",
      "title": "Make comparison panel",
      "topics": [
        "makeCompPanel"
      ]
    },
    {
      "page": "makeDiffPanel",
      "title": "Make difference panel",
      "topics": [
        "makeDiffPanel"
      ]
    },
    {
      "page": "makeOverallPanel",
      "title": "Make overall panel",
      "topics": [
        "makeOverallPanel"
      ]
    },
    {
      "page": "minimiseSCE",
      "title": "Minimise SCE",
      "topics": [
        "minimiseSCE"
      ]
    },
    {
      "page": "mockBulkeQTL",
      "title": "Generate mock eQTL mapping results",
      "topics": [
        "mockBulkeQTL"
      ]
    },
    {
      "page": "mockBulkMatrix",
      "title": "Generate mock bulk population scale expression data",
      "topics": [
        "mockBulkMatrix"
      ]
    },
    {
      "page": "mockEmpiricalSet",
      "title": "Generate set of \"empirical\" mock data",
      "topics": [
        "mockEmpiricalSet"
      ]
    },
    {
      "page": "mockGFF",
      "title": "Generate mock gff",
      "topics": [
        "mockGFF"
      ]
    },
    {
      "page": "mockVCF",
      "title": "Generate mock vcf",
      "topics": [
        "mockVCF"
      ]
    },
    {
      "page": "newParams",
      "title": "New Params",
      "topics": [
        "newBASiCSParams",
        "newKersplatParams",
        "newLun2Params",
        "newLunParams",
        "newParams",
        "newPhenoParams",
        "newSCDDParams",
        "newSimpleParams",
        "newSparseDCParams",
        "newSplatParams",
        "newSplatPopParams",
        "newZINBParams"
      ]
    },
    {
      "page": "Params",
      "title": "The Params virtual class",
      "topics": [
        "Params",
        "Params-class"
      ]
    },
    {
      "page": "phenoEstimate",
      "title": "Estimate PhenoPath simulation parameters",
      "topics": [
        "phenoEstimate",
        "phenoEstimate.matrix",
        "phenoEstimate.SingleCellExperiment"
      ]
    },
    {
      "page": "PhenoParams",
      "title": "The PhenoParams class",
      "topics": [
        "PhenoParams",
        "PhenoParams-class"
      ]
    },
    {
      "page": "phenoSimulate",
      "title": "PhenoPath simulation",
      "topics": [
        "phenoSimulate"
      ]
    },
    {
      "page": "scDDEstimate",
      "title": "Estimate scDD simulation parameters",
      "topics": [
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